Polygenic risk scores for kidney function and their associations with circulating proteome, and incident kidney diseases
Journal of the American Society of Nephrology Sep 25, 2021
Yu Z, Jin J, Tin A, et al. - A polygenic risk score (PRS) for estimated glomerular filtration rate (eGFR) is now robust enough to capture risk for a wide range of incident kidney diseases and has a broad influence on the plasma proteome, mediated predominantly by eGFR.
The authors created a genome-wide PRS for eGFR by applying the LDpred algorithm to summary statistics generated from a multiethnic meta-analysis of CKDGen Consortium Genome-wide association studies [GWAS] (N = 765,348) and UK Biobank GWAS (90% of the cohort; N = 451,508), followed by best parameter selection using the remaining 10% of UK Biobank (N = 45,158).
The developing PRS exhibited substantial relationships with all outcomes, with hazard ratios ranging from 1.06 to 1.33 per 1 SD lower PRS.
At both time points, the PRS was found to be strongly related to 132 proteins.
Cystatin-C, collagen alpha-1(XV) chain, and desmocollin-2 had the strongest connections.
Except for five proteins, including testican-2, most proteins were increased at poorer kidney function.
The majority of the genetic PRS-protein correlations were mediated by eGFR.
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